I think Attorney Ross's has given you a best answer. I just mention to you that the watermark may be there to protect you rather than exploit you....

If I made a PDF with an illegal version of a program does that mean that the PDF file I made is also Illegal?

If I steal a car and go to the store and buy a DVD is the DVD illegal? Depends on the DVD not the stolen car. Same for you. What´s in the PDF?

If I use a companies name in a domain name to sell their products is that copyright or trademark infringement?

YES, almost certainly trademark infringement. Trademarks deal with brand names, that is with words, symbols or other indicators of a common source...

What do i need to file the BEST PROVISIONAL PATENT POSSIBLE? Specific points (not generic advice) is GREATLY appreciated

To file the best PPA possible you need the best patent attorney possible because YOU cannot possibly do that without one. I doubt you are aware of...

Which option should I amend for rejection of my trademark?

I have 40 years of evidence that tells me you are making a huge mistake trying to do this on your own. I have some "other advice" I think would be...

If I create a new website and app, can't Facebook (or a large web presence) just steal the product concept?

You are messed up. You don't know a patent from a trademark from a copyright from an anthill I am afraid. I suppose that is why you are here. You...

Should I send counter-notification or wait for my account to be terminated?

CC-BY is the generic CC license, that allows sharing and adaptation even commercially. So, generally I would think you want to file the...

Why is YouTube and Facebook so much different regarding copyright infringement?

Why does one town stop speeders for 3mph over the limit and others not unless 13mph over? You know the answer. YouTube relies more on DMCA take...

Sounds like sour grapes! You signed releases. The student appears to own the copyright, so absence of an agreement works against you, not for...

These are inexpensive. You should refile.