What are my rights as far as two non violent felonys and possessing collectable knifes while on probation in upstate ny?

Rule number one of probation: do what your probation officer say. There are of course outrageous requests. But that does not seem the case with...

What can I do I have proof of everything I can not lose my job over this.PLEASE HELP ME

You can hire an aggressive defense attorney to represent you. It sounds like you have an excellent defense.

What would the remedy be for this type of error now that the case is in the appeal process?

The verdict could be vacated for a due process rights violation.

There is not enough information to answer your question. What do you mean?

Can i apply for a green card in the future after my case is dismissed and sealed (ACD)

If the case has already been dismissed and sealed then then should be fine. Consult with an immigration attorney to be sure.

Do you think the ada will offer a plea to a class b misdmeneanor on a class A misdemeanor to avoid a jury trial?

First, nobody here can answer that question. The best person to aka is your current attorney. Second, unless the ADA is recommending more than 3...

Would be wrong to just speak with the ADA and see if theres a deal i can take where i just get fined a ton of money?

You should hire an attorney to talk to the ADA. I doubt the ADA will speak directly to you.

Is there a small lawsuit here? i did exactly what was asked of me and still incarcerated for my efforts?

Based on what you wrote you might have vivid right action. Consult with an attorney who specializes in civil rights.

Can parents be held responsible for underage drinking under their roof(,even if they explicitly forbid it)?

If it is your property then you could be liable. Clearly you may know if you're asking this question.

Evidence admissibility? Is a transcript of messages transmitted via internet admissible in court?

The short answer is yes. But it needs authentication via either one of the parities or from the service or both.