You would be eligible to apply to the program and could eventually be accepted. Your bigger problem would be gaining employment upon graduation, as many employers would likely decline to hire someone convicted of felonies involving and assault or battery.
Let me start by saying that you should consult with an attorney because it appears you filed the wrong type of petition. Since your charges were dismissed, you are eligible to have your case expunged - which is better than sealing.
You probably forgot to have the State Attorney execute section B of the Certificate of Eligibility.
Also, if it was employee theft, you should consider getting an attorney because some judges view such theft very negatively.