If these damages were truly latent (not knowable through reasonable and customary inspection) there may be a window to seek relief through suit. A complaint with the Department if Business and Professional Regulation is free, and may get some action, but they may avoid getting involved in a civil contract matter. Best to consult formally with construction counsel to see where you can go with this.
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The statute of limitations on a contract is 5 years in Florida. Did you get any warranty from the roofer? You may need to see an attorney to find out if you can do anything.
R. Jason de Groot, Esq., 386-337-8239